Tom A. Williams, Adrian A. Davin, Benoit Morel, Lenard L. Szantho, Anja Spang,
Alexandros Stamatakis, Philip Hugenholtz, Gergely J. Szollosi:
"Parameter estimation and species tree rooting using ALE and GeneRax"
PDF,
Genome Biology and Evolution, evad134, 2023.
Johanna Trost, Julia Haag, Dimitri Hoehler, Luca Nesterenko, Laurent Jacob, Alexandros Stamatakis, Bastien Boussau:
"Simulations of sequence evolution: how (un)realistic they really are and why",
biorXiv preprint, 2023.
Anastasis Togkousidis, Alexey M. Kozlov, Julia Haag, Dimitri Höhler, Alexandros Stamatakis:
"Adaptive RAxML-NG: Accelerating Phylogenetic inference under Maximum Likelihood using dataset difficulty",
biorXiv preprint, 2023.
Tom A. Williams, Adrian A. Davin, Benoit Morel, Lenard L. Szantho, Anja Spang,
Alexandros Stamatakis, Philip Hugenholtz, Gergely J. Szollosi: "The power and limitations of species tree-aware phylogenetics",
biorXiv preprint, 2023.
Ben Bettisworth, Alexander I. Jordan, Alexandros Stamatakis:
"Phylourny: efficiently calculating elimination tournament win probabilities via phylogenetic methods",
open access, Statistics and Computing:33(80), 2023.